All of these suggestions are on a per ship basis.
First off as far as resources. Ores should respawn daily per ship. Fruits and other food related stuff should respawn 2 times a day minimum in my opinion. This would allow people to have a decent supply of food items stocked up while keeping progression in check at a steady pace.
Second Daily, Weekly, and other limited time quests should be on a per ship basis. For people who have characters on multiple ships having only one set of quests is very bad and severely limits people and makes it harder to do anything. I can understand limiting it so that alt farming for meseta isnt a thing but that should be limited to ships since we cant freely switch between ships on a whim.
These are the current ideas a fair bit of other people and myself have come to the consensus on. We understand the want for limiting things but currently things are a bit too restricted and feel a bit bad. Not being able to complete dailies because of resources not respawning at a set pacing is always a bad thing and having daily and weekly quests account based is really bad for players who have friends on different ships.